PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000234.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 57aa    MW: 6867.01 Da    PI: 10.5601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000234.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07730126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             ykt+lC  +++ G+C++  +C+FaHg
  Itr_sc000234.1_g00027.1  7 YKTRLCVLYQK-GHCHR-QSCSFAHG 30
                             9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.61E-6336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-11536IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.343632IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MVERKLYKTR LCVLYQKGHC HRQSCSFAHG DAELRRFSAP FDATEMRRKV HMFIHSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167742.13e-23PREDICTED: zinc finger CCCH domain-containing protein 13
TrEMBLA0A328DYP51e-17A0A328DYP5_9ASTE; Uncharacterized protein
STRINGXP_010267784.13e-16(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA612399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.14e-09C3H family protein