PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000234.1_g00037.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 320aa MW: 37162.9 Da PI: 6.5262

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000234.1_g00037.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.1	1e-10	226	305	14	94
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 g l++p + +++h+++ + ++l+de+g+ W+ +++ + gr++l++ W++ +++n ++e+D ++ +++ ++ ++elv+ Itr_sc000234.1_g00037.1 226 GELYIPFEVIRDHNIE--LPANVILRDEKGKNWNTYVKTWSD-GRTWLSGEWRNLCRQNLVQENDRCICEFMpSNsLGKELVI 305 6799*******866..8889***********76655.5789****************999886644435555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.588	1	55	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-6	3	57	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-9	3	59	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.1E-17	210	312	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-18	210	312	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.87	213	313	IPR003340	B3 DNA binding domain
CDD	cd10017	1.13E-9	214	311	No hit	No description
SMART	SM01019	9.6E-5	216	313	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-9	226	305	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MQKVWNIEIT ETEDDCFFKH DWAKFVEDNS FFNGDQLIFI YDHPALFDFI VLDSSGCEKI 60 IVDGKEARVK GLKNNNDGDV NCQDNTFWVE FEFNMVTQVK KDEDEMDADE EKNDVIGFQH 120 HMSPSKGKRC ITTEGGFKRA ATMKKRNASP KRGKKNATAK KKRDVSEEES DVSAEKMDAS 180 EEKKDGSVKK KKDVRDHFGV ELFSSGRFTQ PKNPYFVTKI RPRRPGELYI PFEVIRDHNI 240 ELPANVILRD EKGKNWNTYV KTWSDGRTWL SGEWRNLCRQ NLVQENDRCI CEFMPSNSLG 300 KELVIQVTII RRKDLEAQPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	162	KKRNASPKRGKKNATAKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166019.1	1e-161	PREDICTED: putative B3 domain-containing protein At5g66980

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1091	22	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60140.1	1e-09	B3 family protein