PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000236.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 225aa    MW: 25513.5 Da    PI: 6.0582
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000236.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1962115457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++++eq++ Le+ F  +r++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Itr_sc000236.1_g00010.1  62 KRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 115
                              45899***********************************************95 PP
2HD-ZIP_I/II118.53.7e-3861151292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqv+lLE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + en+rLe++v +L
  Itr_sc000236.1_g00010.1  61 RKRKLSEEQVNLLEQSFGDERKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKAEHESTVLENCRLETQVLKL 146
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              +e+l 
  Itr_sc000236.1_g00010.1 147 KEQLC 151
                              *9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.5E-1959120IPR001356Homeobox domain
CDDcd000863.31E-1761117No hitNo description
SuperFamilySSF466892.72E-1861124IPR009057Homeodomain-like
PROSITE profilePS5007116.94161116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-2063123IPR009057Homeodomain-like
PfamPF000469.6E-1763115IPR001356Homeobox domain
PRINTSPR000311.5E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.5E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAGCGGINNN QVDDQMALIS QFYPDIYTQL LSDQGEAAEA KPRRRRKKNK AGGDGGLTGI  60
RKRKLSEEQV NLLEQSFGDE RKLESERKDR LASELGLDPR QVAVWFQNRR ARWKNKKLEE  120
EYSKLKAEHE STVLENCRLE TQVLKLKEQL CDAENRVQML LDRRHHGGGG GGDGVSSNSP  180
STSSFPTEAP PFFGEFGMDG LDDVFYVDEN HYGHVVDQWI KFYGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14563RKKNKAGGDGGLTGIRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182421.11e-133PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232087e-68ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A3Q7F7L44e-86A0A3Q7F7L4_SOLLC; Uncharacterized protein
STRINGSolyc02g085630.2.16e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.16e-59homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]