PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000246.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26750.4 Da    PI: 9.5459
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000246.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.5e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien++nrqvt+skRrng++KKA+EL vLCda+v+++++s++gkl+ey+s
  Itr_sc000246.1_g00003.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIVMISTSGKLHEYIS 59
                             79***********************************************86 PP
2K-box90.92.3e-3071167197
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              yqk+ g++l++++ e++q +l+kL++ ++ L+re+R+++Ge+L++Ls+++L +L +++++s+k iR++K++++ +qie+ +kk ++
  Itr_sc000246.1_g00003.1  71 YQKTVGVDLWSSHFEKMQDQLKKLRDVNRALRREIRQRMGESLNDLSFEQLTELIEDVDNSIKLIRERKYKVIGNQIETHKKKVRN 156
                              899999******************************************************************************** PP

                    K-box  87 lqeenkaLrkk 97 
                              ++e++++L  +
  Itr_sc000246.1_g00003.1 157 VEEIHRNLLLE 167
                              *******9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.861161IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002655.18E-39280No hitNo description
SuperFamilySSF554553.53E-35394IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1883168IPR002487Transcription factor, K-box
PROSITE profilePS5129715.02784174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIVMIST SGKLHEYISP  60
STSTKQLFDQ YQKTVGVDLW SSHFEKMQDQ LKKLRDVNRA LRREIRQRMG ESLNDLSFEQ  120
LTELIEDVDN SIKLIRERKY KVIGNQIETH KKKVRNVEEI HRNLLLECEA RQEDPYGLVD  180
HEGDYNSVLG FANGGPRILA LRLQPDHHHH HPHGHLHSGG GSDLTTFTLL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15159159MEF2 CHIMERA
6byy_B1e-15159159MEF2 CHIMERA
6byy_C1e-15159159MEF2 CHIMERA
6byy_D1e-15159159MEF2 CHIMERA
6bz1_A2e-15159159MEF2 CHIMERA
6bz1_B2e-15159159MEF2 CHIMERA
6bz1_C2e-15159159MEF2 CHIMERA
6bz1_D2e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1420890.0HQ142089.1 Ipomoea cordatotriloba MADS (MADS) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019166161.11e-167PREDICTED: floral homeotic protein PMADS 1
SwissprotP237061e-136DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A484KVP61e-148A0A484KVP6_9ASTE; Uncharacterized protein
STRINGXP_009794650.11e-141(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-89MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]