PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000246.1_g00055.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SAP

Protein Properties

Length: 362aa MW: 40296.5 Da PI: 6.5642

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000246.1_g00055.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	566	1.2e-172	2	358	95	453
SAP 95 rltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletr 180 +lt iW+r +l+r+tWr+e++++h+ta+nfr++ry y tl+f p++ d ++d lsCr+lalsd++laaGf+dG+vrlf + tr Itr_sc000246.1_g00055.1 2 NLTGLIWNRRHLIRNTWRDEFMFWHQTANNFRRGRYVYRTLHFAPPNDD---NNDGLSCRRLALSDHHLAAGFSDGTVRLFYIPTR 84 79999**************************************9333...4589************************** PP SAP 181 lhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpG 266 lh+stf+p+hrdrlGr+s+avsGi+++d++lvfa+ldGdihv vi aa++rra+lGdvvndGalvdf+Gs+rWwvGlyaGvpG Itr_sc000246.1_g00055.1 85 LHLSTFRPHHRDRLGRYSSAVSGIILTDAQLVFASLDGDIHVVVIGD--AAPPRRAHLGDVVNDGALVDFTGSDRWWVGLYAGVPG 168 *****************************************98..78******************************* PP SAP 267 rafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeee.rrGlivssld 351 rafhiW++eteelvfvGG+ltdPeavmGWh+lteltelvGrvrvt+ etavaCt +rl+vfdl+nqg +++ee++ + Gl v+++d Itr_sc000246.1_g00055.1 169 RAFHIWNSETEELVFVGGTLTDPEAVMGWHLLTELTELVGRVRVTGLETAVACTGMRLIVFDLQNQGFIIGEEDQfQFGLTVGAFD 254 ****************************************************************9997765169**** PP SAP 352 asneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkeg.ylyslrervgevnalvadd 435 a ++++++d+rG+a+vrr+e+l++ f+v g aq+gv+gC+ngg+a+++ag+ +rvWeie+ g yl slrer+ ++na+vad+ Itr_sc000246.1_g00055.1 255 ARGDSFLIMDNRGAASVRRAEDLAQRGWFNVGGaAQGGVMGCMNGGFAIMFAGSRVRVWEIERGDGvYLRSLRERNLDINAMVADE 340 *****************************99************************9999*************** PP SAP 436 rhvavsssdgtihlldfg 453 rhva++ssd+tihl+dfg Itr_sc000246.1_g00055.1 341 RHVAACSSDATIHLWDFG 358 ***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50978	6.5E-13	54	254	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	3.0E-11	63	122	IPR015943	WD40/YVTN repeat-like-containing domain
SuperFamily	SSF50978	6.5E-13	298	356	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	3.0E-11	308	357	IPR015943	WD40/YVTN repeat-like-containing domain
PROSITE pattern	PS00678	0	343	357	IPR019775	WD40 repeat, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MNLTGLIWNR RHLIRNTWRD EFMFWHQTAN NFRRGRYVYR TLHFAPPNDD NNDGLSCRRL 60 ALSDHHLAAG FSDGTVRLFY IPTRLHLSTF RPHHRDRLGR YSSAVSGIIL TDAQLVFASL 120 DGDIHVVVIG DAAPPRRAHL GDVVNDGALV DFTGSDRWWV GLYAGVPGRA FHIWNSETEE 180 LVFVGGTLTD PEAVMGWHLL TELTELVGRV RVTGLETAVA CTGMRLIVFD LQNQGFIIGE 240 EDQFQFGLTV GAFDARGDSF LIMDNRGAAS VRRAEDLAQR GWFNVGGAAQ GGVMGCMNGG 300 FAIMFAGSRV RVWEIERGDG VYLRSLRERN LDINAMVADE RHVAACSSDA TIHLWDFGGG 360 PH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MNLTGLIWNR RHLIRNTWRD EFMFWHQTAN NFRRGRYVYR TLHFAPPNDD NNDGLSCRRL  60
ALSDHHLAAG FSDGTVRLFY IPTRLHLSTF RPHHRDRLGR YSSAVSGIIL TDAQLVFASL  120
DGDIHVVVIG DAAPPRRAHL GDVVNDGALV DFTGSDRWWV GLYAGVPGRA FHIWNSETEE  180
LVFVGGTLTD PEAVMGWHLL TELTELVGRV RVTGLETAVA CTGMRLIVFD LQNQGFIIGE  240
EDQFQFGLTV GAFDARGDSF LIMDNRGAAS VRRAEDLAQR GWFNVGGAAQ GGVMGCMNGG  300
FAIMFAGSRV RVWEIERGDG VYLRSLRERN LDINAMVADE RHVAACSSDA TIHLWDFGGG  360
PH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198391.1	0.0	PREDICTED: transcriptional regulator STERILE APETALA-like
Swissprot	Q9FKH1	1e-140	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A328DBM7	0.0	A0A328DBM7_9ASTE; Uncharacterized protein
TrEMBL	A0A484NIK3	0.0	A0A484NIK3_9ASTE; Uncharacterized protein
STRING	XP_009596786.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4099	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-142	SAP family protein

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]