PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000246.1_g00056.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SAP

Protein Properties

Length: 83aa MW: 8275.06 Da PI: 6.5957

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000246.1_g00056.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	73.5	3.1e-23	1	83	1	79
SAP 1 msssssssssese....egseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqv 79 mssss ss ++s+ eg eg++gg + + ++ ++s+sr+r n+v+peP++eala qvaida++++Grlaaa+ala +fqv Itr_sc000246.1_g00056.1 1 MSSSSPSSTNSSSpepvEGREGSAGGVRFEAATSSSSRSRRRGGNGVLPEPIVEALACQVAIDAASNNGRLAAAPALASLFQV 83 555554443333300113333333433444777888999999****************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MSSSSPSSTN SSSPEPVEGR EGSAGGVRFE AATSSSSRSR RRGGNGVLPE PIVEALACQV 60 AIDAASNNGR LAAAPALASL FQV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198391.1	9e-23	PREDICTED: transcriptional regulator STERILE APETALA-like
TrEMBL	A0A0B2SGI7	2e-13	A0A0B2SGI7_GLYSO; Uncharacterized protein
TrEMBL	F6HHP0	2e-13	F6HHP0_VITVI; Uncharacterized protein
STRING	VIT_12s0057g00910.t01	4e-14	(Vitis vinifera)