PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000249.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 130aa MW: 14419.4 Da PI: 5.1534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000249.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.9	2.9e-12	47	70	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG C yG+rC+F+H++ Itr_sc000249.1_g00012.1 47 ADCIYYLRTGLCGYGARCRFNHPR 70 68********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.413	43	71	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-5	43	70	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.28E-7	46	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-9	47	70	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.5E-6	49	70	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MERHSGTQAM EGAGGAAETG LEEPLWQLSL SGGGGGPESY PERPNDADCI YYLRTGLCGY 60 GARCRFNHPR DRSLAVRAMR ASGGEYPERV GQPLCQLLLI VYLSFCSPYC EFVLFHSLEK 120 WSVDWQLVLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179744.1	2e-52	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
Refseq	XP_019179745.1	2e-52	PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
Swissprot	Q6NPN3	1e-26	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	M1C2H3	9e-41	M1C2H3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400058323	2e-41	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16834	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	4e-26	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]