PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000252.1_g00020.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 254aa    MW: 27853.8 Da    PI: 7.9542
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000252.1_g00020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.86.8e-282104198
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C++dC+l+p++     p++q++++ +++k++G++ +++l+++ p+  r+++++sl+yeA+ r+ +P++G++g++ 
  Itr_sc000252.1_g00020.1   2 SCNGCRVLRKGCSEDCTLRPCLhwinsPQSQANATIFLAKFYGRAGLINLINQGPDLLRPAIFKSLLYEACGRIINPIHGSAGLVG 87 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelallk 98 
                              +++++l+++++e++l +
  Itr_sc000252.1_g00020.1  88 EGRWELCTEAVEAVLKG 104
                              **********9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.021107IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-222100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEDCTLR PCLHWINSPQ SQANATIFLA KFYGRAGLIN LINQGPDLLR  60
PAIFKSLLYE ACGRIINPIH GSAGLVGEGR WELCTEAVEA VLKGMPITPL STGHGGAPAR  120
PIFPLKGSDI RHFSKDSRPV RRVRTRNRFK RSASVHGGAL LPAFDEFTAE PAKFSITGWD  180
CDKPENNGSN RAPSHDSLSV ETVEPSLVNR EWPVWIPETE TWTGDEDGEP MLELTLGVNP  240
ARRAPAEKLC ISNL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6239108e-37AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160131.11e-172PREDICTED: LOB domain-containing protein 40-like isoform X2
TrEMBLA0A068TWE66e-94A0A068TWE6_COFCA; Uncharacterized protein
STRINGXP_009777707.13e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-65LOB domain-containing protein 41