PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000253.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 234aa    MW: 24492.4 Da    PI: 8.688
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000253.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.92.3e-382584362
                   zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  Itr_sc000253.1_g00002.1 25 PEHLRCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 84
                             57899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-272182IPR003851Zinc finger, Dof-type
PfamPF027013.3E-332782IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0032882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0042545Biological Processcell wall modification
GO:0045787Biological Processpositive regulation of cell cycle
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPSADNSDQR RAAKQQQVGA PPPEPEHLRC PRCDSTNTKF CYYNNYNFSQ PRHFCKSCRR  60
YWTHGGTLRD IPVGGGSRKN AKRSRTIPSS SSGAAAATNA AAFPGHDFRH AAAPSSFLFP  120
LGADHAGSVP FPADMVKPGL NVCGSFTSLL NTQGPGLLAL GGFGLGPTID DMGYGFSRAV  180
WPFPGVPEAA ANGGTAAVLS GGPWQLSTGE NAFVNGDCFG LPDLAISTQG TGMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00402DAPTransfer from AT3G50410Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185378.11e-131PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBLA0A484LFS51e-90A0A484LFS5_9ASTE; Uncharacterized protein
STRINGXP_009591716.14e-88(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45322241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.15e-51OBF binding protein 1