PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000257.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 348aa MW: 38279.8 Da PI: 4.1769

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000257.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	26.9	1.3e-08	6	102	2	88
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy.kvePwdLpkkvkaeekewyfFskrdkkya..tgkrknra..... 77 p G+ F+P d +lv ++L + v++++ ++e i+e d++ + ePw+L ++ +e+ yf +k +kk + tg r +r+ Itr_sc000257.1_g00022.1 6 PLGLFFQPFDYDLV-RFLFEFVTATNnsADEEGLIHEEDMFgDKEPWELI-RYGPSENMAYFLTKLKKKGKlkTGCRVERTvgkkv 89 7899********.7777777666623444456987256***7.66667788899998888766557889999756666 PP NAM 78 ..tksgyWkatgk 88 k g W+ + k Itr_sc000257.1_g00022.1 90 kgKKPGNWHGQDK 102 6656899997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-6	3	102	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEMEIPLGLF FQPFDYDLVR FLFEFVTATN NSADEEGLIH EEDMFGDKEP WELIRYGPSE 60 NMAYFLTKLK KKGKLKTGCR VERTVGKKVK GKKPGNWHGQ DKVADERVLP AGDYSEESLA 120 RAKYPIVEER KDFVLCRLER KKDEEDEDED DEKTTTLEQG GKDLEVETTS PIITPSPVET 180 LTVADDDINS NLIGEETLAL TKDDMNSFLA SLAATGDTDG GHDHNISSYF DGVPVPVPVG 240 DTDISSYLDG VPVPVPVGDT DIISSYLDGV RVPVPARDTD IISSYLDGVR VPVPVPAGDT 300 DIISSYLDGV PVPVPVPAGD TDMKAQRAKS PPLRLESTPP MWSATECH

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEMEIPLGLF FQPFDYDLVR FLFEFVTATN NSADEEGLIH EEDMFGDKEP WELIRYGPSE  60
NMAYFLTKLK KKGKLKTGCR VERTVGKKVK GKKPGNWHGQ DKVADERVLP AGDYSEESLA  120
RAKYPIVEER KDFVLCRLER KKDEEDEDED DEKTTTLEQG GKDLEVETTS PIITPSPVET  180
LTVADDDINS NLIGEETLAL TKDDMNSFLA SLAATGDTDG GHDHNISSYF DGVPVPVPVG  240
DTDISSYLDG VPVPVPVGDT DIISSYLDGV RVPVPARDTD IISSYLDGVR VPVPVPAGDT  300
DIISSYLDGV PVPVPVPAGD TDMKAQRAKS PPLRLESTPP MWSATECH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152455.1	3e-47	PREDICTED: NAC domain-containing protein 83-like