PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000259.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 253aa    MW: 29292.1 Da    PI: 9.8384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000259.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll+++vk++G g+W+++a+  g++R +k+c++rw +yl
  Itr_sc000259.1_g00009.1 13 KGPWTAEEDRLLIQYVKLHGEGRWNSVAKLQGLKRNGKSCRLRWVNYL 60
                             79******************************99************97 PP
2Myb_DNA-binding53.65.3e-1766110147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Itr_sc000259.1_g00009.1  66 RGQITPHEERIIIELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110
                              7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.817860IPR017930Myb domain
SuperFamilySSF466893.95E-3110107IPR009057Homeodomain-like
SMARTSM007174.7E-171262IPR001005SANT/Myb domain
PfamPF002492.8E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241467IPR009057Homeodomain-like
CDDcd001674.34E-131560No hitNo description
PROSITE profilePS5129425.68461115IPR017930Myb domain
SMARTSM007171.2E-1565113IPR001005SANT/Myb domain
PfamPF002492.4E-1466110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2568114IPR009057Homeodomain-like
CDDcd001671.53E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMGWGVLDEG WRKGPWTAEE DRLLIQYVKL HGEGRWNSVA KLQGLKRNGK SCRLRWVNYL  60
RPDLKRGQIT PHEERIIIEL HAKWGNRWST IARSLPGRTD NEIKNYWRTH FKKKAKSSAA  120
DNTEKSRARL LRKQQFHLQQ LQQQQQQQQQ QYNIQTDITK KVIPLFDENN ETRVAAPSVP  180
QGQGGVFYPE QDQGFFFSLM NGYVPSVAEA PSNDQDSIMW DGLWNLDDFQ GNFCAVSAAN  240
KICSLQPIAA PFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-28611520128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181215.11e-157PREDICTED: transcription factor MYB24-like
TrEMBLA0A2P6QRR51e-100A0A2P6QRR5_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_009795062.11e-100(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-81myb domain protein 305