PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000259.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 131aa    MW: 14922.3 Da    PI: 9.0981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000259.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM737.3e-23211312120
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwd.LpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                GfrFh t+eelv +yL +kv + +l ++ vi ++ +i+k++Pwd Lp+++    ++ yfFs+r+ k+ +g+r n+        a
  Itr_sc000259.1_g00017.1  21 LLGFRFHLTNEELVLHYLSPKVLNFPLLAF-VILDIdNICKYDPWDyLPSTL---YEDGYFFSTREVKNGRGNRFNK--------A 94 
                              67************************8884.5666659*******9446443...4578*******99887766666........5 PP

                      NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektd 120
                               gkdk++  +   ++lvg+kktLv+ykg++++g++t+
  Itr_sc000259.1_g00017.1  95 IGKDKKIAISgvLQRLVGMKKTLVYYKGKSSNGSRTN 131
                              7899999887556678*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-2616131IPR003441NAC domain
PROSITE profilePS5100524.820131IPR003441NAC domain
PfamPF023654.0E-1223123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MLSSSSSPEE CCLIDNMSLL LLGFRFHLTN EELVLHYLSP KVLNFPLLAF VILDIDNICK  60
YDPWDYLPST LYEDGYFFST REVKNGRGNR FNKAIGKDKK IAISGVLQRL VGMKKTLVYY  120
KGKSSNGSRT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-182013115132Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184661.14e-45PREDICTED: NAC domain-containing protein 83-like
SwissprotO227983e-29NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A482ETG67e-31A0A482ETG6_IPOBA; NAC14
STRINGXP_009600037.19e-31(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-31NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]