PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000263.1_g00021.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 211aa MW: 23341 Da PI: 9.3322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000263.1_g00021.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + Fs++ L H++ H Itr_sc000263.1_g00021.1 29 FSCNFCQREFSTSQALGGHQNAH 51 89******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.17E-7	26	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	27	55	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.468	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	53	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
METIRSNSKS SNAGESSERR DDSLPAKIFS CNFCQREFST SQALGGHQNA HKHERAIAKR 60 RKGLIDTFVT SHYHPYYHPY STISSQMPTF SSQMPVYNSL SNRSLGLMPN LHRLPSYHQS 120 SLLGRNYSRL EDIIRPASNM IINSGAFATA PVANSSKVEI KMGNTSTIKV DGNRTSAGDS 180 KTEGQNNPLL GDDEKGKDEE AAWGMDLTLK L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176450.1	1e-102	PREDICTED: zinc finger protein 7-like
STRING	Solyc01g005190.1.1	3e-28	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-16	C2H2 family protein