PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000264.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 409aa    MW: 44082.2 Da    PI: 7.8791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000264.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-3182186199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Itr_sc000264.1_g00006.1  82 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSNNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 167
                              89****************************77788999************************************************ PP

                              EE-.SS.SEE..EEEEE-S CS
                       B3  83 kld.gr.sefelvvkvfrk 99 
                              ++   +  + +l++ ++r+
  Itr_sc000264.1_g00006.1 168 QRGaAEsVKDRLFIDWRRR 186
                              *653444666788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-4277191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-3079171IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-2780169No hitNo description
SMARTSM010191.8E-2282187IPR003340B3 DNA binding domain
PfamPF023625.2E-2982186IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4182187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MRPFSVASSS LSYGRQQQRV WLDGGGEGEG GGGGGEAAGG VMMMMMDSST AAAAGGGGGE  60
GEGGGDEAAS SSGVLMEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSNNEKGLL  120
LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD AGDIVSFQRG AAESVKDRLF  180
IDWRRRPDSH SDHHHHHHRH HHHHLPPISI PHHLSFQRSI YTAAAQPPPW NHQAVLSAPP  240
PYGYTYGFGS TTHHNSVIFN GGASGSAVVV NGNPCSSGIY LRPMSAAHQQ EIMQRRGGGG  300
AMVFESVPVV QGKAAAKRLR LFGVNMDCPI SDSDDCDIIS SSSSAASASV SAASPTTIPT  360
SLQLRPCGGY DTTTQELMEA GCCSCRCYAA LMGRYQSYDA GNVSEVLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-64751871114B3 domain-containing transcription factor NGA1
5os9_B2e-64751871114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170329.11e-174PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-78Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A484KCH51e-117A0A484KCH5_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000318631e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.15e-62B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]