PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000269.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 224aa MW: 24795.8 Da PI: 6.396

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000269.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	24.3	6.8e-08	61	81	31	51
G2-like 31 tilelmkvkgLtlehvkSHLQ 51 il++m+v+ Lt+ehv+SHLQ Itr_sc000269.1_g00003.1 61 DILKAMNVQKLTREHVASHLQ 81 79******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-11	20	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-5	20	84	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGGRSSNRTT TAAVLKMFII SWTVELHFRL LVAIMFLGDN EEVVVPSKVL EVMMNDERSR 60 DILKAMNVQK LTREHVASHL QGHEEIKRRQ LVKPPPNSSR RLRRRLDVVP LSTTEQDESM 120 VCSTSSSITN TNTNTNNNNN NNNVSMIPSF GDNNVVAAAG NYDTQTMAAS FGHNMISVAA 180 TPPIYNNIGL GNHLTPDFIY NNINQDADAD ADAVPVGRNE GHYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	7e-08	response regulator 12