PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000271.1_g00104.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 240aa    MW: 27145.5 Da    PI: 8.1208
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000271.1_g00104.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l   ++++G ++W++ +r  g+ R++k+c++rw +yl
  Itr_sc000271.1_g00104.1 14 KGPWTPEEDQILTSFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61
                             79******************************99************97 PP
2Myb_DNA-binding544e-1767112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++++E+e ++++++ lG++ W++Ia++++ gRt++++k++++++l
  Itr_sc000271.1_g00104.1  67 RGNFSKDEEETIIQLHQTLGNR-WSAIASRLP-GRTDNEIKNFYNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.155961IPR017930Myb domain
SuperFamilySSF466894.21E-3010108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002496.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241568IPR009057Homeodomain-like
CDDcd001671.39E-111661No hitNo description
PROSITE profilePS5129423.36862116IPR017930Myb domain
SMARTSM007174.5E-1766114IPR001005SANT/Myb domain
PfamPF002495.8E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2769116IPR009057Homeodomain-like
CDDcd001672.42E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVRAPCCEKM GMKKGPWTPE EDQILTSFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKDEEETIIQ LHQTLGNRWS AIASRLPGRT DNEIKNFYNT HLKKRLQHHG  120
SPYYSPNNVV GNITPIQIGD SSIHLRFPAP MTVNCNSVGR QNSTYSISSP MTTKMEEEES  180
MQESYQNYLG TTSNDDSGIV YLPSSSSVLP MELGGCETSS SISNDAVFWY NLLINAGNTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141167108B-MYB
1gv2_A5e-28141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-28141164105C-Myb DNA-Binding Domain
1msf_C4e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191836.11e-151PREDICTED: transcription repressor MYB6-like
TrEMBLA0A068TX922e-81A0A068TX92_COFCA; Uncharacterized protein
STRINGXP_009606766.14e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-72myb domain protein 15