PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000275.1_g00031.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 400aa    MW: 45314.1 Da    PI: 6.6932
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000275.1_g00031.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-12264289126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y   +C+++ +tG+C yGd+CkF+H+
  Itr_sc000275.1_g00031.1 264 YQPDICKDYKETGYCGYGDSCKFMHD 289
                              66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-9262294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878263291IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7263290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-12264294IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10264289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-13323381IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.4E-8339380No hitNo description
SuperFamilySSF578501.25E-12339382No hitNo description
SMARTSM001843.7E-4340377IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.409340378IPR001841Zinc finger, RING-type
CDDcd001624.88E-8340381No hitNo description
PROSITE patternPS005180355364IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLSRSLSLSD GSAVLESEIS YLFKLHFNFI GHGNSSPILT LLELCRTVDL PACLEGAILP  60
VYVIYIILLP PMAEEPEKAN SEDPQQTVCS FFRKPSKAKN IRKRTAAEEG ENEDGYSKDE  120
TSVVFNKKKP TVADNKLHFS TGPSKREVTS ESDAHSKKLL FQFESSREIQ VQTDNKATAT  180
LETETEFSKD ARAIRERVLK RAEEALKGKN ESTVDEKLYK GIHGYTDYKA GFRREHTISS  240
EKAGGSHGPL RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE  300
KEWDEAEKAK KRRMEMGMLD DDESAEQSDD DDDDALPFAC FICRQPFVDP VMTKCKHYFC  360
EHCALKHHAK NKKCFVCNQP TLGIFNTAFE IRKKMAAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-71723951317RING finger protein 113A
5z58_M6e-71723951317RING finger protein 113A
6ff4_t6e-71723951317RING finger protein 113A
6ff7_t6e-71723951317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178113.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_019178114.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_019178115.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_019178117.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_019178118.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-164C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A484MAC60.0A0A484MAC6_9ASTE; Uncharacterized protein
STRINGXP_009794839.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-156C3H family protein