PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000276.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 240aa    MW: 27323.9 Da    PI: 7.0106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000276.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-1460112155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn+ Er RR+riN  ++ Lr+llP  +   + kKls  ++ +++ +YI +Lq
  Itr_sc000276.1_g00003.1  60 KKLSHNASERDRRKRINALYSSLRSLLPAsD---QTKKLSIPATITRVLKYIPELQ 112
                              6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.29159111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-1160116No hitNo description
PfamPF000101.1E-1160112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1660129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1460130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1065117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLAFSSPLSF PSSFWPLEES IRHEEFNTDM CRDEMTFLDP NGSCESLKFS ESNGAAMEIK  60
KLSHNASERD RRKRINALYS SLRSLLPASD QTKKLSIPAT ITRVLKYIPE LQKQVERLQQ  120
RKEELGSRIS RQESSSAEFN KRRRVETQSS IGAAVSVTRV GERQVVIHLC TNNGSKVSFA  180
DAISCLEKEG MVLTDSSSFQ TLEHRVFCTF HLQMNGTPGM QVDELREKLL SCFEEKEENF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162253.11e-144PREDICTED: transcription factor ORG2-like isoform X1
RefseqXP_019162254.11e-144PREDICTED: transcription factor ORG2-like isoform X1
TrEMBLA0A1S4AF173e-65A0A1S4AF17_TOBAC; transcription factor ORG2-like
STRINGXP_009625856.15e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.16e-48bHLH family protein