PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000277.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 648aa MW: 70758.2 Da PI: 6.4211

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000277.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116	1.5e-36	136	195	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprCds++tkfCy+nny+++qPr+fCk+C+ryWt GG rn+PvG+grrk+k+s Itr_sc000277.1_g00011.1 136 PDKIIPCPRCDSMETKFCYFNNYNVNQPRHFCKKCQRYWTSGGMTRNLPVGAGRRKSKNS 195 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	129	193	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-30	138	194	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.503	140	194	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	142	178	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MPEVSKDPAI KLFGKTIQLP DAPAPAPATE MDVDPGGGAA SSPPPADEFS AKDSSCSEAE 60 GGEDEQLQKN ENGESEEDEG TVLLEGEEIM DESVDEMRDG LKAPPVDEDG GGGTEISTTE 120 EEGKMSTGKD KTLKKPDKII PCPRCDSMET KFCYFNNYNV NQPRHFCKKC QRYWTSGGMT 180 RNLPVGAGRR KSKNSAAHYH HLNAVKSFQS ARVDHPERIQ HHALKANGKV LTLASDSPLC 240 DSVASALNIA EKTAGNGFYK PVELGIPVSY GAGDNGADHS SGSSSSTKDD VCKNGLPDMM 300 RQNYHGFAPQ LPCFPGPPWP YPSNAVQWSS AVPPPGCFSP GFPMPFYPPA MYLGYTIPCS 360 WNAPWVNRPV APQQHTSSGP NSPTLGKHSR DDNAVTPASI KEGEPPKDSN PEKCLWVPKT 420 LRFDDPEDAA KSSIWATLGI KHDRVDSIRG GAFKAFKLKD DEKSHASKNC RVLEANPAAL 480 SSEQPWVMTL RSYNIFSKIR QLDADFQLFV LRKERFYSID EQRIGSLEAT GGCPSPEAGQ 540 RRGRATTKVL SRHALVLGKA HQKPELSGLY FPEVYKSQVN FSYDLFLSWK MMGPLHHANS 600 AAVSFQEKWV VYQRDYEQAG PNVHSQPALL SPPPPSSPPL ASPPSLQY

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MPEVSKDPAI KLFGKTIQLP DAPAPAPATE MDVDPGGGAA SSPPPADEFS AKDSSCSEAE  60
GGEDEQLQKN ENGESEEDEG TVLLEGEEIM DESVDEMRDG LKAPPVDEDG GGGTEISTTE  120
EEGKMSTGKD KTLKKPDKII PCPRCDSMET KFCYFNNYNV NQPRHFCKKC QRYWTSGGMT  180
RNLPVGAGRR KSKNSAAHYH HLNAVKSFQS ARVDHPERIQ HHALKANGKV LTLASDSPLC  240
DSVASALNIA EKTAGNGFYK PVELGIPVSY GAGDNGADHS SGSSSSTKDD VCKNGLPDMM  300
RQNYHGFAPQ LPCFPGPPWP YPSNAVQWSS AVPPPGCFSP GFPMPFYPPA MYLGYTIPCS  360
WNAPWVNRPV APQQHTSSGP NSPTLGKHSR DDNAVTPASI KEGEPPKDSN PEKCLWVPKT  420
LRFDDPEDAA KSSIWATLGI KHDRVDSIRG GAFKAFKLKD DEKSHASKNC RVLEANPAAL  480
SSEQPWVMTL RSYNIFSKIR QLDADFQLFV LRKERFYSID EQRIGSLEAT GGCPSPEAGQ  540
RRGRATTKVL SRHALVLGKA HQKPELSGLY FPEVYKSQVN FSYDLFLSWK MMGPLHHANS  600
AAVSFQEKWV VYQRDYEQAG PNVHSQPALL SPPPPSSPPL ASPPSLQY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ605443	0.0	KJ605443.1 Ipomoea nil cultivar Violet CDF2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195276.1	0.0	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195277.1	0.0	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195278.1	0.0	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195279.1	0.0	PREDICTED: cyclic dof factor 1-like
Refseq	XP_019195280.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A0D3MTJ8	0.0	A0A0D3MTJ8_IPONI; CDF2
STRING	XP_010088142.1	1e-165	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-88	cycling DOF factor 2