PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000277.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ZF-HD
Protein Properties Length: 342aa    MW: 36037.9 Da    PI: 8.1523
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000277.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.12.8e-3566123359
              ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                               v+YkeClkNhAas+GghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
  Itr_sc000277.1_g00014.1  66 VVVYKECLKNHAASIGGHAVDGCGEFMPSPTANpADPTSLKCAACGCHRNFHRREPDE 123
                              589******************************9********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-2967121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.22569120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.4E-3269120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-2369119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.65E-18196269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-30198269IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-27208265IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDLGSNPPAA NNTSSAAAAA VKGGDVQESE TPAAARISAV KPLSFSSNGV LKRHNSLHHH  60
NHHAVVVVYK ECLKNHAASI GGHAVDGCGE FMPSPTANPA DPTSLKCAAC GCHRNFHRRE  120
PDEPLAPPSA APALEYQPHH RHHPPPPPPP PHDHSSPNSP SPPPISSSYY PSAPHMLLAL  180
STGLSGHPAA DNTTTPISAP SSAHMKGRKR FRTKFTQDQK DKMLDFAERV GWKIQKRDEE  240
LINDFCREIG VERGVLKVWM HNNKNTVGKR DNITTTTPPA AAACGGGGGP TENGNSHSLG  300
FDIGRVNSAP LTSDNNGSHS QNHYALHGGG DVLAANGSSS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232092661875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154856.11e-160PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG05e-70ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A328D6381e-118A0A328D638_9ASTE; Uncharacterized protein
STRINGXP_009620291.18e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-61homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]