PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000284.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 267aa    MW: 30115.5 Da    PI: 8.1038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000284.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-15855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed +lv +v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Itr_sc000284.1_g00001.1  8 KGPWTEQEDVQLVFYVNLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 55
                             79********************************************97 PP
2Myb_DNA-binding53.26.7e-1761106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              r ++T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
  Itr_sc000284.1_g00001.1  61 RCKMTPQEERLILELHSKWGNK-WSRIARKLP-GRTDNEIKNYWRTHM 106
                              6689******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.472355IPR017930Myb domain
SuperFamilySSF466897.7E-296102IPR009057Homeodomain-like
SMARTSM007172.1E-12757IPR001005SANT/Myb domain
PfamPF002492.0E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-19962IPR009057Homeodomain-like
CDDcd001671.18E-91055No hitNo description
PROSITE profilePS5129427.08656110IPR017930Myb domain
SMARTSM007176.4E-1660108IPR001005SANT/Myb domain
PfamPF002492.8E-1561105IPR001005SANT/Myb domain
CDDcd001671.05E-1263106No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2363109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVQEEFRKGP WTEQEDVQLV FYVNLFGDRR WDFLAKVSGL KRTGKSCRLR WVNYLHPGLK  60
RCKMTPQEER LILELHSKWG NKWSRIARKL PGRTDNEIKN YWRTHMRKKA QENKKKKGGA  120
CISASSSSLT NCCSYSSSAN SPAAVESEVD EANERNFYDT GGDVEQLPPA HDNGGAGATK  180
AYTMDEIWKD IEQLGDVYCG NNQQRSVTAS PMWNYWAETL WTATADYNPG AGAGTGESKI  240
ASFPPPPTNN DQFYSSFDNQ GSIFLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-2851101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-27511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199606.11e-157PREDICTED: transcription factor MYB59-like isoform X1
SwissprotQ9LX821e-74MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A1U8H1643e-90A0A1U8H164_CAPAN; transcription factor MYB48-like
STRINGXP_009770621.13e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-71myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]