PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000284.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 172aa    MW: 19465.1 Da    PI: 7.2675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000284.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000427395123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ Cg  F r   L  H+++H
  Itr_sc000284.1_g00002.1 73 HVCTVCGLEFERGQALGGHMSKH 95
                             79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-73895No hitNo description
PfamPF139122.2E-103964IPR007087Zinc finger, C2H2
SMARTSM003550.564062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0764067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-46996IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.277395IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1273103IPR007087Zinc finger, C2H2
PfamPF139121.5E-97396IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAVLKRSNRD DDVESLAMAN CVMLISRMDE EQIAMSGRVY ECKTCRKKFH SFQALGGHRA  60
SHKRPRMSSE KKHVCTVCGL EFERGQALGG HMSKHRTHAQ PLPLPAQQHN NIIKSADNLY  120
SDSKVVVKEQ QEEKEEDSSP DSIKVVVSWD LNLTPHENET TELILAAEIR LN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199464.14e-85PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A328DP789e-43A0A328DP78_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-28C2H2 family protein