PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000284.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 321aa MW: 33914.5 Da PI: 9.128

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000284.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprCdst tkfCyynnyslsqPr+fCk+CrryWt+GGa+rnvPvGgg+r+nk+s+ Itr_sc000284.1_g00022.1 70 PENGLKCPRCDSTSTKFCYYNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKRSK 130 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	54	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-32	72	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVFSSFPVYL DHSNLHQLQQ SAAGYHQQGT GLENPQISTL PVPAPVGAGQ GSIRPGSTVD 60 RARLARMPQP ENGLKCPRCD STSTKFCYYN NYSLSQPRHF CKTCRRYWTR GGAMRNVPVG 120 GGCRRNKRSK KSGGAAAAVS DKQSGGGGAG NSNNINTSTA AHISCPTSCG SAEISGNFSQ 180 PPLMAAFQAG LNHFGGFQPP QLVANENGGF GDMSFQLGAE PWRLPASLTA FDTPPPTNLF 240 PFQNESIEAS SSRATPEFPQ LTSSVKMEDA QGLNSNSTKQ FLGVLGNNQF WGGAGGNTWT 300 TGGFSGHLNS NSTSSSTTHL L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199019.1	1e-167	PREDICTED: dof zinc finger protein DOF5.1-like
Refseq	XP_019199020.1	1e-167	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1S3XXZ7	2e-92	A0A1S3XXZ7_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009774236.1	5e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	2e-43	DNA binding with one finger 2.4