PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000285.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 255aa    MW: 28959.6 Da    PI: 7.8539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000285.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16170219355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+++AeIrdp     k  r++lg+++ + +Aa+a++ a+ k++g
  Itr_sc000285.1_g00002.1 170 YRGVRRRP-WGKYAAEIRDP---DrKGCRIWLGTYDNEVDAARAYDCAAFKMRG 219
                              9*******.**********8...3245**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-33169233IPR001471AP2/ERF domain
PROSITE profilePS5103223.551169227IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22169229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-30169228IPR001471AP2/ERF domain
PfamPF008471.8E-11170219IPR001471AP2/ERF domain
PRINTSPR003673.0E-13170181IPR001471AP2/ERF domain
CDDcd000189.31E-23177227No hitNo description
PRINTSPR003673.0E-13209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMMATQDEGT TLELIRQHLL GDFATSTATT SDAFIDNLNF CFPDNNLFTN PQIATDFSTE  60
FVPLQFTDQD FFSGTNFFSI KFEFSNSDLN ELNQPDLPSV PCFNPHLNFP QFYETKPDIF  120
EDKMSSVKEP QTPPAPNPIA TEHVPWISGG RREYGSGFTC VNRTGKGRYY RGVRRRPWGK  180
YAAEIRDPDR KGCRIWLGTY DNEVDAARAY DCAAFKMRGS KAILNFPMDA GKALPPAKVN  240
RKRRKESKSK MAVKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26166228264ATERF1
3gcc_A2e-26166228264ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245RKRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192675.11e-136PREDICTED: ethylene-responsive transcription factor 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-31ERF family protein