PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000285.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 340aa    MW: 36467.4 Da    PI: 9.817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000285.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-1294138347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT++E+  ++ + ++lG+g+W+ I+rt   +Rt+ q+ s+ qky
  Itr_sc000285.1_g00013.1  94 SWTEDEHRSFLIGLEKLGKGDWRGISRTYVPTRTPTQVASHAQKY 138
                              7***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.598723IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.19687143IPR017930Myb domain
SuperFamilySSF466896.44E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1690141IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-991137IPR009057Homeodomain-like
SMARTSM007176.7E-791141IPR001005SANT/Myb domain
CDDcd001671.64E-894139No hitNo description
PfamPF002492.5E-994138IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTKETLRKCS HCGHNGHNSR TCKGCSSIRL FGVKINVSGD ENHNDPIRRC KSMGSLQQAL  60
KSANNNGDHG GGGGGGDAGY LSDDSNRTRK KGTSWTEDEH RSFLIGLEKL GKGDWRGISR  120
TYVPTRTPTQ VASHAQKYFI RMSSCDKKKR RSSVFDLGLN DTNQAPPPSS SDKAPPEIPK  180
LASVPPSAPP VTKDESKGKA IETASEKLPI APVDKAFTVM NLGHERPPIS QNTTCEKPPI  240
SPVSPLVPPS FNCMPYMNVP ATQLMPVVSW APVVTYPSYG YLGNSHGNYA APAGCVQYVP  300
PRPVGPLLPR ETHRGGPHGG LVAPATKKDG LDLNMGALKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192025.10.0PREDICTED: protein REVEILLE 6
TrEMBLA0A328E2M05e-79A0A328E2M0_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-48MYB_related family protein