PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000285.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 216aa    MW: 24176.2 Da    PI: 5.8313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000285.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.2e-07637132
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                             rg+W++eEd +l+ +++ +G  +W+  ++  g
  Itr_sc000285.1_g00019.1  6 RGAWSPEEDTKLISYIRNHGIWNWTQMPKFAG 37
                             89******************999999998887 PP
2Myb_DNA-binding31.44.5e-1069108748
                              HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              eE e++++  + +G++ W++ a+ ++ gR+++++k++++++l
  Itr_sc000285.1_g00019.1  69 EEVEIIIKMYESMGNR-WSAMAAQLP-GRSDNEIKNFFHTHL 108
                              999*************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-9235IPR009057Homeodomain-like
SuperFamilySSF466891.03E-134104IPR009057Homeodomain-like
SMARTSM0071711542IPR001005SANT/Myb domain
PfamPF002492.0E-5638IPR001005SANT/Myb domain
PROSITE profilePS512949.95861112IPR017930Myb domain
SMARTSM007174.2E-665110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-1769109IPR009057Homeodomain-like
PfamPF002491.6E-869108IPR001005SANT/Myb domain
CDDcd001677.07E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAEVKRGAWS PEEDTKLISY IRNHGIWNWT QMPKFAGTLI IPWGSLVVVH EPLINVIVNW  60
LIICNGCREE VEIIIKMYES MGNRWSAMAA QLPGRSDNEI KNFFHTHLKK HLRRQEPKHA  120
ATDHHRISKA DNTTSDDAKI NIIADDCKLL GSSSSSVVIL ESSRSCSSSR VVENNDGSSG  180
GNNGTAVVAP PFSSDTDDDV NGFWYDVLME AEYLNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191854.12e-96PREDICTED: myb-related protein Myb4-like
STRINGXP_009594711.14e-34(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000515133e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.17e-28myb domain protein 15