PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000286.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 260aa    MW: 29473.1 Da    PI: 7.5102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000286.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171259148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd ll ++++++G g W+ ++++ g++R++k+c++rw++yl
  Itr_sc000286.1_g00003.1 12 KGAWTEEEDNLLRKYIEEFGEGKWHQVPAKAGLNRCRKSCRLRWLNYL 59
                             79********************************************97 PP
2Myb_DNA-binding284.9e-09741061448
                              HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              d++ +l +  W++Ia +++ gRt++++k++w+++l
  Itr_sc000286.1_g00003.1  74 DLIIRLHKL-WSLIAGRIP-GRTANDVKNYWNTHL 106
                              667777777.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-23762IPR009057Homeodomain-like
PROSITE profilePS5129424.928763IPR017930Myb domain
SuperFamilySSF466892.85E-239102IPR009057Homeodomain-like
SMARTSM007171.0E-151161IPR001005SANT/Myb domain
PfamPF002491.4E-161259IPR001005SANT/Myb domain
CDDcd001673.30E-111459No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1663108IPR009057Homeodomain-like
SMARTSM007171.6E-564108IPR001005SANT/Myb domain
PROSITE profilePS5129411.44764110IPR017930Myb domain
PfamPF002496.9E-780106IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDKTAAKTGM KKGAWTEEED NLLRKYIEEF GEGKWHQVPA KAGLNRCRKS CRLRWLNYLR  60
PNIKRGDFAW DEVDLIIRLH KLWSLIAGRI PGRTANDVKN YWNTHLKKTA EFGMPKPPRR  120
QQENGRGNIV DIGPPPRPPN FSKLSSFLSL GTETTTTTPT TMPDNDVSKR TFTPSPPADS  180
VTQWWENLLA IGERDGAITW SPSLTTSDEG DKAVGDGETW SRVIGDGKST FIEEGEFSWN  240
EFQFPMGTSK WNDGIWDLGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-15101115109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6180301e-122JQ618030.1 Ipomoea nil MYB1 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154715.11e-131PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV96e-52MY113_ARATH; Transcription factor MYB113
TrEMBLM9NV774e-70M9NV77_IPOPU; MYB1 (Fragment)
STRINGEOY039642e-66(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-49myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]