PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000289.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 447aa MW: 47582.6 Da PI: 10.0044

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000289.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.3e-15	368	423	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ +++ Itr_sc000289.1_g00004.1 368 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQAEIMEMQKNMA 423 79*******************************************99999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.7E-15	364	428	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.427	366	417	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.41E-27	368	420	No hit	No description
Pfam	PF00170	1.2E-13	368	425	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-11	368	419	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.0E-15	368	422	No hit	No description
PROSITE pattern	PS00036	0	371	386	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MGSNLNFGNE PPGSGGGSGG GGRFPGNFGL TRQPSVYSLT FDEFQSSMGG IGKDFGSMNM 60 DELLKNIWSA EENQTMVSSS GAQEGGVPGP GGYLQRQGSL TLPRTLSQKT VDEVWRDMSK 120 VYDIGKDGSA LGASNIPQRQ PTLGEITLEE FLVRAGVVRE EAQLAAGKAA ESAALFGDLT 180 HTLNNSGLGF GFQQAGQNTG LMVNRTNESK SVIEIQSPSM PLNVNGARSA QPQLGTAHLQ 240 QKQHQQPLFP KQPVLPYAVP MAIPNTSPLG SNGIRGVAMG TSDPAMNGSN NAVMNGSFVQ 300 SPALHGGGMG MVGLGAGGVS VATRSPAVSS DGFAKSNGDT SSVSPVPFVF NGSLRGRKSS 360 AIEKVVERRQ RRMIKNRESA ARSRARKQAY TMELEAEVAK LKEENEELQK KQAEIMEMQK 420 NMALEMMNNI QQGAKRRCLR RTQTGLW

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MGSNLNFGNE PPGSGGGSGG GGRFPGNFGL TRQPSVYSLT FDEFQSSMGG IGKDFGSMNM  60
DELLKNIWSA EENQTMVSSS GAQEGGVPGP GGYLQRQGSL TLPRTLSQKT VDEVWRDMSK  120
VYDIGKDGSA LGASNIPQRQ PTLGEITLEE FLVRAGVVRE EAQLAAGKAA ESAALFGDLT  180
HTLNNSGLGF GFQQAGQNTG LMVNRTNESK SVIEIQSPSM PLNVNGARSA QPQLGTAHLQ  240
QKQHQQPLFP KQPVLPYAVP MAIPNTSPLG SNGIRGVAMG TSDPAMNGSN NAVMNGSFVQ  300
SPALHGGGMG MVGLGAGGVS VATRSPAVSS DGFAKSNGDT SSVSPVPFVF NGSLRGRKSS  360
AIEKVVERRQ RRMIKNRESA ARSRARKQAY TMELEAEVAK LKEENEELQK KQAEIMEMQK  420
NMALEMMNNI QQGAKRRCLR RTQTGLW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152949.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-124	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	V5L0A1	0.0	V5L0A1_SOLNI; AREB-like protein
STRING	XP_009592272.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-100	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]