PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000289.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 345aa    MW: 38712.7 Da    PI: 7.9793
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000289.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36251172103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk
  Itr_sc000289.1_g00010.1  25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANEFFK 101
                              9*****************************************************************99.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i+r+k++
  Itr_sc000289.1_g00010.1 102 RGEKHLLCEIHRRKTA 117
                              *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.53E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPQ  120
VAVSHHHHHH AMNEPSFFSA YNPARLSVSP PDSDEPLTPH NNNAWCDSPS FASSTVISAA  180
NSGGGASYNT GSVAALSEDN VRLRRSNNML MSELAHMRKL YNDIIYFVQN HVKPVTPSNS  240
YPSPLTHQKP PSQLVTYPHP HLPTKHQPCN NAIFNLSSPT KTSQSSVTLV EEAPAPDLCR  300
TKLFGFPLQS KKRLHPDQAA AAGHKARVLV LEKDDLALHL MPPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-222011716123Heat shock factor protein 1
5d5u_B3e-222011625131Heat shock factor protein 1
5d5v_B3e-222011625131Heat shock factor protein 1
5d5v_D3e-222011625131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152416.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A067LCE11e-160A0A067LCE1_JATCU; Uncharacterized protein
STRINGXP_002510200.11e-157(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4