PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000290.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 303aa    MW: 33813.2 Da    PI: 6.512
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000290.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-082522852154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp+++++++L +++gL+ +q+ +WF N+R +
  Itr_sc000290.1_g00010.1 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285
                              469*****************************87 PP
2ELK26.31.7e-09206227122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK +L++++++++ ++++E++
  Itr_sc000290.1_g00010.1 206 ELKIELKQGFRSRIEDVREEIL 227
                              9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-173680IPR005540KNOX1
PfamPF037902.4E-163879IPR005540KNOX1
SMARTSM012564.5E-2691146IPR005541KNOX2
PfamPF037914.7E-1994145IPR005541KNOX2
PROSITE profilePS512139.184206226IPR005539ELK domain
PROSITE profilePS5007111.677226289IPR001356Homeobox domain
SuperFamilySSF466894.11E-16228293IPR009057Homeodomain-like
SMARTSM003891.4E-10228293IPR001356Homeobox domain
CDDcd000862.72E-11229290No hitNo description
Gene3DG3DSA:1.10.10.607.2E-25233291IPR009057Homeodomain-like
PfamPF059201.0E-17246285IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQEEGVGLMG SGGGGGLGLG DISSSMAAAA CGEQQRQLKA EMATHPLYEQ LLAAHVACLR  60
VATPIDQLPL IDAQLSHSHH LLRSYASNHS PSLSPHERQE LDNFLAQYLL VLCSFKEQLQ  120
QHVRVHAVEA VMACREIEQN LQALTGASLG EGTGATMSDD EDELALQMDF SLDQSAGGDG  180
GHDLMGFGPL LPTESERSLM ERVRQELKIE LKQGFRSRIE DVREEILRKR RAGKLPGDTT  240
TVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK  300
RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12229285864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282302RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189194.10.0PREDICTED: homeobox protein HD1
SwissprotQ9FPQ81e-170KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A4D8Y4D60.0A0A4D8Y4D6_SALSN; Uncharacterized protein
STRINGXP_007158449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-161KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]