PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000292.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 384aa MW: 42708.3 Da PI: 10.1042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000292.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	318	363	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er+RR ri +++ +L el P+ +k + a++L +A e+Ik+Lq Itr_sc000292.1_g00005.1 318 SIAERNRRTRISERMKKLHELFPNM----DKQTNTADMLDLAAEHIKDLQ 363 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.7	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-14	315	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.23E-10	316	367	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-13	317	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	318	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-7	318	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MFSSEAAISR EMSSSNTSAF MFSDNSSYRN FMGNEILRRK DIAASYLFQQ HNHQSGGMMR 60 FRSAPSSFLA TMVDRAGNSS SVNGGDGNFT ANDGSDTVFS SRLNGNGSGS VHDGNSDSRS 120 LRFMKPGIAE ENQRRRSSGD GNGNWDRKQM VYEAPGMEKQ QQMKNESILV RQRSSEGFFS 180 GFEAMGEVGN YRHSNGESSS STSGFNNHIK HSSSAQQSAG SNNHMPTIAE NESWNESSIN 240 CLKKRTQEGN FKLLSATSNG MATQNEEPRT SAPGLTRHLS MPKTAAEMVA TEKYFQFQQH 300 TILCKIRAKR GCATHPRSIA ERNRRTRISE RMKKLHELFP NMDKQTNTAD MLDLAAEHIK 360 DLQKQVQTLT DKRAKCTCSR KAQP

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MFSSEAAISR EMSSSNTSAF MFSDNSSYRN FMGNEILRRK DIAASYLFQQ HNHQSGGMMR  60
FRSAPSSFLA TMVDRAGNSS SVNGGDGNFT ANDGSDTVFS SRLNGNGSGS VHDGNSDSRS  120
LRFMKPGIAE ENQRRRSSGD GNGNWDRKQM VYEAPGMEKQ QQMKNESILV RQRSSEGFFS  180
GFEAMGEVGN YRHSNGESSS STSGFNNHIK HSSSAQQSAG SNNHMPTIAE NESWNESSIN  240
CLKKRTQEGN FKLLSATSNG MATQNEEPRT SAPGLTRHLS MPKTAAEMVA TEKYFQFQQH  300
TILCKIRAKR GCATHPRSIA ERNRRTRISE RMKKLHELFP NMDKQTNTAD MLDLAAEHIK  360
DLQKQVQTLT DKRAKCTCSR KAQP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157249.1	1e-120	PREDICTED: transcription factor bHLH130-like
TrEMBL	A0A2G2XRU6	6e-96	A0A2G2XRU6_CAPBA; Transcription factor bHLH80
TrEMBL	M1CDA4	5e-96	M1CDA4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400065029	9e-97	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-51	bHLH family protein