PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000296.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 495aa    MW: 53710.6 Da    PI: 7.7047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000296.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86e-25192248259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y++ Hnhe
  Itr_sc000296.1_g00006.1 192 PDGYNWRKYGQKQVKSPQGSRSYYRCTYSDCCAKK-IECSDHTNRVTEIVYRSPHNHE 248
                              5********************************98.*********************8 PP
2WRKY99.32.4e-31363419258
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ +++++v+itY+g H+h
  Itr_sc000296.1_g00006.1 363 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAVDNTTAVIITYKGVHDH 419
                              7******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.3E-23191249IPR003657WRKY domain
SuperFamilySSF1182902.09E-19191250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-20191250IPR003657WRKY domain
PROSITE profilePS5081118.108193250IPR003657WRKY domain
PfamPF031061.4E-17193248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-32348422IPR003657WRKY domain
PROSITE profilePS5081132.34357422IPR003657WRKY domain
SuperFamilySSF1182902.88E-27358422IPR003657WRKY domain
SMARTSM007748.7E-36362421IPR003657WRKY domain
PfamPF031066.3E-24364419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDDTGEASKP SLQLQNTCAD IGGGGGGGDE PSGATTGTET SEEAQVGGSD SEETLDTVDS  60
PSIQLDKSAS RPDSLATSSS HVLSEVPIEY SLHPSEFLKE IKDEVGISNQ KASTVQAQRR  120
NQLQSADDPS VLELSPTSVT QSISSIPSPT PGERRLSPLE NRNGACIQEV DNQNSSNSKA  180
LSLVPVLKIQ APDGYNWRKY GQKQVKSPQG SRSYYRCTYS DCCAKKIECS DHTNRVTEIV  240
YRSPHNHEPP RKVNTPKVNK LAISSMPRSQ DSKVARLNSN ADETVPSTSK KHVKETIPIS  300
ETKQQDFSGL DDNAETNVKR EDCDEPTQKK RLKKCSSSLE SLPKPGKKAK LVVHAGGDVG  360
ISSDGYRWRK YGQKMVKGNP HPRNYYRCTS AGCPVRKHIE RAVDNTTAVI ITYKGVHDHG  420
MPVPKKRYGQ PSAPLVAATA SASMTDSQTK KSEPTTQWSV DKEGALTGET LEHEGEKTVE  480
SAKTLLSIGF EIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-26349422174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182230.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-110WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A328DFB20.0A0A328DFB2_9ASTE; Uncharacterized protein
STRINGXP_009624879.11e-177(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-112WRKY DNA-binding protein 32