PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000297.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15479.9 Da    PI: 8.2029
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000297.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.9e-161361149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+ie +s r vtfskRr+g++KKA EL   ++a+va+++fs+++  y+y
  Itr_sc000297.1_g00011.1 13 KKIEKESSRMVTFSKRRTGLFKKAVELEDKTGARVAMVVFSPRDIPYTY 61
                             68*****************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.521565IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-17564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-20679IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-14727IPR002100Transcription factor, MADS-box
PfamPF003192.2E-201461IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-142742IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-144263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MMRGTGKKKI EIKKIEKESS RMVTFSKRRT GLFKKAVELE DKTGARVAMV VFSPRDIPYT  60
YGDIPAMSDL LDKITNNNNA VVPYGGAQMQ EDHAAVAATP SSNYENLMRW VDSIDVDGCN  120
SLEEILKLKQ ILECLLHN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019193122.11e-58PREDICTED: floral homeotic protein AGAMOUS-like
TrEMBLA0A2G3BTU25e-32A0A2G3BTU2_CAPCH; Uncharacterized protein
STRINGXP_009603478.13e-28(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-15AGAMOUS-like 61