PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000298.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 248aa    MW: 26943.2 Da    PI: 6.5259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000298.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20109159255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  Itr_sc000298.1_g00001.1 109 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAIAYDKAAYRMRG 159
                              7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32108168IPR001471AP2/ERF domain
PfamPF008477.1E-14109159IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-23109169IPR016177DNA-binding domain
CDDcd000185.47E-29109168No hitNo description
PROSITE profilePS5103224.263109167IPR001471AP2/ERF domain
SMARTSM003801.0E-37109173IPR001471AP2/ERF domain
PRINTSPR003677.3E-11110121IPR001471AP2/ERF domain
PRINTSPR003677.3E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFQPVSAELP AANFPVYHRS SSFSSLMSCL TETWGDLPLK EDDSEDMVIY GVLRDAVSDG  60
WTPFNFTAGE VKAEPWESIE AAVTPACAAP TFVATPAAAP AAARPKGRHY RGVRQRPWGK  120
FAAEIRDPAK NGARVWLGTY ETAEEAAIAY DKAAYRMRGS KALLNFPHRI GSNEPDPVRV  180
TAKRRSPEPE ASSTSSVSEN GSPKRRRKVA AAEQADSDVE SRSNPLPAEC HANILPIGEQ  240
LIVSQLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-38106174270ATERF1
3gcc_A9e-38106174270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208PKRRRKV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192076.11e-141PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-118ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLA0A1U7VHW31e-115A0A1U7VHW3_NICSY; ethylene-responsive transcription factor 2
STRINGXP_009765938.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.17e-54ethylene responsive element binding factor 1