PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000299.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 196aa    MW: 22628.4 Da    PI: 6.0844
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000299.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15e-1582140563
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                              +++rr+++NRe+ArrsR RK+  ++eL+  v  L +eN+ L ++l++ ++  +k+ +e+
  Itr_sc000299.1_g00010.1  82 RKQRRMISNRESARRSRMRKQRHLDELRSQVFHLRTENHNLLDKLNQVSDCHDKVLQEN 140
                              689*********************************************99999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.8E-1678142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.47380131IPR004827Basic-leucine zipper domain
PfamPF001704.3E-1382140IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-1382131No hitNo description
Gene3DG3DSA:1.20.5.1707.4E-1382155No hitNo description
CDDcd147027.47E-2183134No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MISSEITGIN YVAADNPLPL PLDYSIMQND IPAHQFSKFL TNWANYQTTL PFPEFPAPLS  60
CVSNNSTSDE SDEHQLRIIG ERKQRRMISN RESARRSRMR KQRHLDELRS QVFHLRTENH  120
NLLDKLNQVS DCHDKVLQEN ACLKEEASGL RQMVMELQLR SPFSDLGELE EITCTTDHLK  180
TEPSNQTNSS SINMFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150000.11e-140PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC22e-34BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S4CIE34e-84A0A1S4CIE3_TOBAC; basic leucine zipper 43-like
STRINGXP_009611005.17e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-46basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]