PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000300.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 156aa    MW: 17033.2 Da    PI: 6.9571
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000300.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP68.12.9e-2144961065
                      TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65
                             k+   + g++RRvRl+a+caar+F+L++eLG+ +d++t+eWLl    p++      
  Itr_sc000300.1_g00006.1 44 KR---GKGSGRRVRLPALCAARIFQLTRELGHRTDGQTVEWLLHHVHPSVFPSSYA 96
                             44...6799*************************************9998655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136914.3273693IPR017887Transcription factor TCP subgroup
PfamPF036349.6E-174990IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEPYRYNATR EEDETFALSS PYPRPLSSSS TPAPLAPARP VTKKRGKGSG RRVRLPALCA  60
ARIFQLTREL GHRTDGQTVE WLLHHVHPSV FPSSYAAAPS TAAEDLSASP SPPYYPQIPA  120
ATPETEQDAV GATSFMALLM QAEKGDFVVK QEMGDY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188972.12e-79PREDICTED: transcription factor PCF1-like
TrEMBLA0A103XHF11e-29A0A103XHF1_CYNCS; Transcription factor, TCP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-16TCP family protein