PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000301.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 432aa    MW: 48802.9 Da    PI: 7.1458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000301.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29.1e-114972427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                             + C f++r+G Ck+G +C+F+H++
  Itr_sc000301.1_g00014.1 49 PDCAFYLRNGACKFGLNCRFNHPM 72
                             78********************95 PP
2zf-CCCH35.41.8e-1195117527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               C+f+++ G+CkyG++C+++H++
  Itr_sc000301.1_g00014.1  95 VCKFYLEAGECKYGESCRYIHSE 117
                              5********************95 PP
3zf-CCCH26.79.3e-09135158326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C+f++ +GtC yG+ C F+H+
  Itr_sc000301.1_g00014.1 135 EKECPFYMSNGTCGYGAHCVFHHP 158
                              689********************8 PP
4zf-CCCH26.79.6e-09282308127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C++f++ G Ck+ + C+F+H++
  Itr_sc000301.1_g00014.1 282 PGQPECKYFMKAGDCKFKSLCRFHHPK 308
                              5789*********************96 PP
5zf-CCCH25.32.7e-08354379126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C ++++tG Ck+ + C+F+H+
  Itr_sc000301.1_g00014.1 354 PGQPECVYYMKTGRCKFKSLCRFHHP 379
                              5789*********************8 PP
6zf-CCCH30.56.3e-10397421226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++Cr+++ +G+Ck+G++C F+H+
  Itr_sc000301.1_g00014.1 397 DEPICRNYQCFGICKFGSTCLFNHP 421
                              789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.4E-64572IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524573IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-54972IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-84972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.94890118IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-791117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-794121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-895120IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-995117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774132160IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014132159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6133159IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7135158IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-4281308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779281309IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6283308IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695353381IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5355379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5357381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666395423IPR000571Zinc finger, CCCH-type
SMARTSM003560.01395422IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5397423IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7397421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDMRRRSFTS SEEEEEEEET LALPEKFANI ALNSGQSSTF ELPRRPNAPD CAFYLRNGAC  60
KFGLNCRFNH PMRMPGQVVD DNYRDSSLEN SPQIVCKFYL EAGECKYGES CRYIHSEGES  120
KLQFNFLGLP IRLGEKECPF YMSNGTCGYG AHCVFHHPNP TPMGGLNPSS TLNDESVGQS  180
HCSFGTLDAG ESLPFSGTSQ LDLTSWPPDA LHMSSDKTLS FPSFSSSHIS SHSERKNYLG  240
PSYLYQRYGL SQSTQVSNAS VKSMESFEHT KAMQSEEFPE RPGQPECKYF MKAGDCKFKS  300
LCRFHHPKGW ARKPDCLLND KGLPLRPVSN ASVKSIESFE HTKAIQSEEF PERPGQPECV  360
YYMKTGRCKF KSLCRFHHPA QKPDCLLNDK GLPLRPDEPI CRNYQCFGIC KFGSTCLFNH  420
PVDYGKWISQ RG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183047.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1640855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-69C3H family protein