PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000304.1_g00015.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 224aa    MW: 25391 Da    PI: 5.1542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000304.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd+ l  +v ++G  +W+  ++  g+ R++k+c++rw +yl
  Itr_sc000304.1_g00015.1 14 KGAWSKEEDDMLRAYVLKHGHQNWRQLPNLAGLSRCGKSCRLRWVNYL 61
                             79********************************************97 PP
2Myb_DNA-binding56.75.4e-1867111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg +T +Ed+l+++++kqlG++ W++Ia++++ gR+++++k++w++ 
  Itr_sc000304.1_g00015.1  67 RGHFTRDEDQLILNLHKQLGNK-WSAIAARLP-GRSDNEIKNHWHTC 111
                              899*******************.*********.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.014961IPR017930Myb domain
SuperFamilySSF466894.21E-3111108IPR009057Homeodomain-like
SMARTSM007176.6E-131363IPR001005SANT/Myb domain
PfamPF002493.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221568IPR009057Homeodomain-like
CDDcd001671.40E-91661No hitNo description
PROSITE profilePS5129426.15162116IPR017930Myb domain
SMARTSM007175.9E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2569114IPR009057Homeodomain-like
CDDcd001673.21E-1270110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MVRAPSVDQN GKKKGAWSKE EDDMLRAYVL KHGHQNWRQL PNLAGLSRCG KSCRLRWVNY  60
LKPGIKRGHF TRDEDQLILN LHKQLGNKWS AIAARLPGRS DNEIKNHWHT CLKKFDNVGV  120
IESSKTQSSS HADDDAQSVQ SSDKSQQQHL APFGLQAATE TLPFSPKTEP FSYFMDSAVL  180
SSVEGTSNDD DDDDDDDSRE LLEQEFFIPD FADEEIQSLL NDFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141147106B-MYB
1h8a_C3e-251411427126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190032.11e-138PREDICTED: myb-related protein Myb4-like
TrEMBLA0A068UTL81e-62A0A068UTL8_COFCA; Uncharacterized protein
STRINGXP_008342092.15e-61(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-53myb domain protein 15