PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000306.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 166aa    MW: 19156.8 Da    PI: 9.1335
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000306.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-141461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEd++l+  ++ +G + W+  ++  g+ R++k+c++rw +yl
  Itr_sc000306.1_g00019.1 14 KGLWSKEEDDKLKTFIESHGHKKWRQLPKIAGLSRCGKSCRLRWMNYL 61
                             678*******************************************97 PP
2Myb_DNA-binding54.82.1e-1767112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g+++ +Ede++v+++++lG++ W++ a+ ++ gR+++++k++w+++l
  Itr_sc000306.1_g00019.1  67 KGAFSVQEDEIIVKLHNKLGNK-WSAMAELLP-GRSDNEIKNHWHTHL 112
                              799*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.587961IPR017930Myb domain
SuperFamilySSF466896.11E-3011108IPR009057Homeodomain-like
SMARTSM007178.1E-131363IPR001005SANT/Myb domain
PfamPF002495.3E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221568IPR009057Homeodomain-like
CDDcd001675.91E-101761No hitNo description
PROSITE profilePS5129424.64462116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.1E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2569115IPR009057Homeodomain-like
CDDcd001671.30E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVKTPSVDQT GIKKGLWSKE EDDKLKTFIE SHGHKKWRQL PKIAGLSRCG KSCRLRWMNY  60
LRPGLKKGAF SVQEDEIIVK LHNKLGNKWS AMAELLPGRS DNEIKNHWHT HLKNRAKHTQ  120
KPEESMEELL PPSAETSEFS DFEFKPPQDD IYNILNPDEV ALPQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-261211625128MYB TRANSFORMING PROTEIN
1mse_C1e-26141164105C-Myb DNA-Binding Domain
1msf_C1e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019158784.11e-104PREDICTED: myb-related protein 308-like
SwissprotQ9FJP22e-49MYB53_ARATH; Transcription factor MYB53
SwissprotQ9M0J52e-49MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A3Q7HD521e-58A0A3Q7HD52_SOLLC; Uncharacterized protein
STRINGSolyc07g054960.1.12e-59(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-51myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]