PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000310.1_g00049.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 287aa    MW: 31407.3 Da    PI: 8.2123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000310.1_g00049.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024426123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC+ C++sF +   L  Hir+H
  Itr_sc000310.1_g00049.1  4 YKCKFCSRSFGNGRALGGHIRSH 26
                             9********************99 PP
2zf-C2H211.30.001159181123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+k+F++   L  H  +H
  Itr_sc000310.1_g00049.1 159 YRCEACSKVFRSYQALGGHRASH 181
                              9***********99999998887 PP
3zf-C2H212.90.00033210232123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+C ++Fs+   L  H r+H
  Itr_sc000310.1_g00049.1 210 HECPICYRVFSSGQALGGHKRSH 232
                              79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-4327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.44E-5328No hitNo description
PROSITE profilePS5015710.242426IPR007087Zinc finger, C2H2
SMARTSM003550.017426IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-6428IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-9158232No hitNo description
PfamPF139122.0E-11158183IPR007087Zinc finger, C2H2
SMARTSM003550.044159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SMARTSM003550.19210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619210237IPR007087Zinc finger, C2H2
PfamPF139121.1E-12210232IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEKYKCKFCS RSFGNGRALG GHIRSHMANL YAESKHPEPR IHGETDPIPF SESDDGEKDS  60
IFSAAGGGDG GGSVVVQDTE SESGSGRVFR RSKRVKKSRI SETSSMVSSS ISETSPEEHV  120
AYCLMMLSKD KWIRDEEEEN SELVKAVKKM KGKGKCCVYR CEACSKVFRS YQALGGHRAS  180
HKKIRAPKNL LESSPNEEGN ARKKKKEKIH ECPICYRVFS SGQALGGHKR SHFADSVSAI  240
VSPEACSAST STPMKQGLSR TGGALIDLNL PAPYDEDDDD DVLSFPC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206RKKKKE
2201207RKKKKEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192545.11e-138PREDICTED: zinc finger protein ZAT1 isoform X2
TrEMBLM1CGE93e-70M1CGE9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000669395e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-34C2H2-like zinc finger protein