PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000312.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 333aa    MW: 36840.1 Da    PI: 5.6314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000312.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31158216259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+
  Itr_sc000312.1_g00011.1 158 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 216
                              79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-31149218IPR003657WRKY domain
PROSITE profilePS5081135.531152218IPR003657WRKY domain
SuperFamilySSF1182905.36E-27154218IPR003657WRKY domain
SMARTSM007743.9E-37157217IPR003657WRKY domain
PfamPF031063.9E-26159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEPDWDLHAV VRGCAVTSTA AAATTTSPFC SFNPRQQDEN LDFSHEPFDF SSSTVNNTTW  60
FNEELHDLYL PFLHRREPPS LPPQSPPPPF PVLRGLEGSV LHNQLNITAT RIQANGQSLS  120
SNASSTTSSN SRPQTPAGKR RKNQMKRLCQ VPAEDLASDM WSWRKYGQKP IKGSPYPRGY  180
YRCSTSKGCL ARKQVERNRS DPNMFIVTYT AEHNHPMPTH RNSLAGSTRR KGASQQTTTS  240
GSETNRPSTS LSPPEKQESS RDEKGGVFDD EFGVSNMVND GNAPEEDDDF FEGMAELGES  300
LKSDDIGDSF SDNFQDAMQF QCWLXPTTAG GGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-24142219280Disease resistance protein RRS1
5w3x_D8e-24142219280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192568.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A1J6JK952e-90A0A1J6JK95_NICAT; Wrky transcription factor 22
STRINGSolyc01g095100.2.16e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-68WRKY family protein