PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000315.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 303aa    MW: 33689 Da    PI: 4.5807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000315.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66e-10119162755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                Er+RR r+++ +  Lr+l+P+      +K++Ka+i   Av Y+++Lq
  Itr_sc000315.1_g00004.1 119 VCERKRRGRMKEMLYSLRSLVPNI-----TKMDKASIIGDAVLYVQDLQ 162
                              57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-15111177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.424112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-11114166No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15114179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7120162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDNVNIPQGN EDRDLGLIDF MDEENLEQFI DLIRGENEEP MGAMFFQQSY GGCENISGYL  60
ADDNLFDYDN VGSYMLSSAN VSGDVGNILP TGENDAGEVS SETTPEKKGT KADRSKTLVC  120
ERKRRGRMKE MLYSLRSLVP NITKMDKASI IGDAVLYVQD LQMQTKKLKA EIANLESSTT  180
TKTDKYEGGT TFLGGKKTNF TNPLPILKKI FKMDVFQVEE RGFYVRIVSS KGQQVAASLY  240
KAVDSLASLF ISSSNLATTT HNYVFTFTFT VRECESDINL PNLKLWIASA FLNQGFGFEA  300
SLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187214.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A068UEV41e-100A0A068UEV4_COFCA; Uncharacterized protein
STRINGXP_009618756.12e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-72FER-like regulator of iron uptake