PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000318.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 203aa MW: 20969.7 Da PI: 5.2429

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000318.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	28.2	5.3e-09	59	97	60	98
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallk 98 sl+yeA r+ +Pv+Gavg++ +++++++q+++e++l++ Itr_sc000318.1_g00003.1 59 SLLYEAAGRTVNPVNGAVGLLGSGKWHVCQAAVETVLRG 97 9********************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.4E-5	59	94	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGVEFLEKDA AIPVFSGPAY TGYRAPTLRA TPPSSLPSSL AAPASCPSSP PSPRTKGLSL 60 LYEAAGRTVN PVNGAVGLLG SGKWHVCQAA VETVLRGGEL RPIPEFLGGV ADCDEGSDCT 120 AQKLSTTLPD GSSKGLKVAA DLDLSLTPGF QASHTPLPGK QRWPPRTLSM NSEESITTTT 180 TCFEGGFGIG DQGGVEPKLL NLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019195381.1	1e-61	PREDICTED: LOB domain-containing protein 37-like
Refseq	XP_019195382.1	1e-61	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	5e-26	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1S4AJK0	2e-47	A0A1S4AJK0_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009626676.1	2e-47	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-24	LOB domain-containing protein 37