PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000322.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24519.8 Da    PI: 9.6531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000322.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.82.9e-232068149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             krie ks r vtfskRr+gi+KKA+ELS LC+aevav++ s+ g+++ +
  Itr_sc000322.1_g00007.1 20 KRIEQKSSRLVTFSKRRAGIFKKASELSMLCGAEVAVLVRSPAGRVFGF 68
                             79******************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.7071272IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-291271IPR002100Transcription factor, MADS-box
CDDcd002652.94E-331383No hitNo description
SuperFamilySSF554552.62E-261391IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-191434IPR002100Transcription factor, MADS-box
PfamPF003193.0E-232168IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-193449IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-194970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MESQDKRNKA SKGKRKIEIK RIEQKSSRLV TFSKRRAGIF KKASELSMLC GAEVAVLVRS  60
PAGRVFGFGY PSIEAVIQRY ENCDAAGDRQ KYCDERVGKV QRATEENRRQ KAVREKIINS  120
SGSQLNMVSQ TGTERDGMLW WATDIDGMGL EELMEFRSAL EGLRNETEKK AKEMAIKPGF  180
SSSSSHEEQH ENVVPLSVDE SNLLFPRSSD FRLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A4e-16281685PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B4e-16281685PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157738.15e-98PREDICTED: MADS-box transcription factor 23-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-24AGAMOUS-like 61