PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000330.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 456aa    MW: 49639.5 Da    PI: 8.8717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000330.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-071501651227
                              TS--TTTTT-SS-SSS CS
                  zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                              +G Ck+G++C+F+H++
  Itr_sc000330.1_g00010.1 150 SGLCKFGASCRFHHPR 165
                              699***********96 PP
2zf-CCCH34.43.6e-11187211327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++++tG+Ck+G +C+F+H++
  Itr_sc000330.1_g00010.1 187 EKECSYYLKTGHCKFGITCTFHHPQ 211
                              689********************97 PP
3zf-CCCH375.5e-12322348127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C ++ +tG Ck+G++CkF+H+p
  Itr_sc000330.1_g00010.1 322 PGQPECEYYKKTGNCKFGSSCKFHHPP 348
                              5789*********************97 PP
4zf-CCCH30.85e-10369394227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +   C+f++r G+Ck+G++CkF H++
  Itr_sc000330.1_g00010.1 369 GVQACCFYLRKGFCKFGGNCKFDHPM 394
                              5678********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.94143165IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.329148166IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4149165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6184212IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-4184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22184212IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8187211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4190210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361321349IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6321348IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9323348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5327347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352367395IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5367394IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-8369394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6370398IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MELYGQSRAK DGFQIDRGAV WAPVRSVRGK EGGVVFDVAS SVFTYLALQN RFGGWDCGSR  60
KGTRRGWACP TAPITCEPGS VDSVPSVGSI TLAVLALYPL DLALLYLLYR YVTPCLLKTG  120
RELFLTPEYG WIATNENMGI SRTTRGAYMS GLCKFGASCR FHHPRNAGGS LSNAPLNIYG  180
FPLRPEEKEC SYYLKTGHCK FGITCTFHHP QPAAISGQAT AHPFYLTVQS LPGPSPEQYS  240
GASSSFRVAR HPFLPDSYTP SAYGPVLLHS GVVPVPNWSQ SGHVIPALSS TTAFAGPYSP  300
LHTTTGLSSC AQREKCFFPE RPGQPECEYY KKTGNCKFGS SCKFHHPPDW VPPNSNCSFS  360
PLGLPLRPGV QACCFYLRKG FCKFGGNCKF DHPMETVNYS PSVSSSLTDA PYMLQPGFAD  420
TSFSRSRLPL PSSASVGFKL SHTAPPTSRP NMRSHC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188221.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W912e-99C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1S4D1T91e-118A0A1S4D1T9_TOBAC; zinc finger CCCH domain-containing protein 32-like isoform X1
TrEMBLA0A314KQX51e-118A0A314KQX5_NICAT; Zinc finger ccch domain-containing protein 32
STRINGXP_009626457.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66222034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-101C3H family protein