PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000331.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 181aa    MW: 19720.2 Da    PI: 9.4866
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000331.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05103122221
                              EETTTTEEESSHHHHHHHHH CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                              +C+ C+++F++k++L  H r
  Itr_sc000331.1_g00003.1 103 VCHLCKMVFTSKEELIIHGR 122
                              7*****************77 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSSNAAIANA SPSGEKSPEK QPTPSRRYET RQKTPSELTL GSPSGGHGGS GRPHAGIHHS  60
KRCFLCESAA DSPKKRKRAK KATGPSAPPP SPAARPDPSQ ETVCHLCKMV FTSKEELIIH  120
GRTNFDVCNL VKFHNALYLK HEQLRQAADH EPALWYGPQT GPTMAGNFIP DLNFPPPPEY  180
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380KKRKRAKK