PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000345.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 191aa    MW: 21017.5 Da    PI: 8.035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000345.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-131061255
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                             r+  + +Er+RR++++  +++L +l+P++   +s+  +s  + L +Av+YIk+Lq
  Itr_sc000345.1_g00010.1 10 RADRKTIERNRRNQMKALYSTLNSLVPHQ---QSTEmMSLPDQLDEAVNYIKKLQ 61
                             677889**********************9...89999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-13677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.239860IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-71065No hitNo description
PfamPF000104.5E-91061IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-131075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00181466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDEQNRNPSR ADRKTIERNR RNQMKALYST LNSLVPHQQS TEMMSLPDQL DEAVNYIKKL  60
QINLERMKEK KESLRSGGGG SSHDQSSSVA SRSSNGGGMA VGGLKLPHVD IHHVDSALEV  120
VLITGVDGSP SMFNDVLRML HEEGADVISA SFSSLDNMVF HTIHSQIEKS GSAYKAQRIS  180
QRLHSFVNGA S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171588.11e-105PREDICTED: transcription factor bHLH125
TrEMBLA0A251PFV94e-63A0A251PFV9_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s05320.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-40bHLH family protein