PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000349.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 634aa    MW: 69060.7 Da    PI: 7.3126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000349.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31279336260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              dD+ynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d+k++ei+Y+g+H+h+k
  Itr_sc000349.1_g00013.1 279 DDEYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGKITEIVYKGSHDHPK 336
                              8****************************************.***************85 PP
2WRKY106.71.2e-33451509159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Itr_sc000349.1_g00013.1 451 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 509
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-26271337IPR003657WRKY domain
PROSITE profilePS5081122.768273337IPR003657WRKY domain
SuperFamilySSF1182907.98E-24276337IPR003657WRKY domain
SMARTSM007741.1E-32278336IPR003657WRKY domain
PfamPF031064.3E-23279335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37436511IPR003657WRKY domain
SuperFamilySSF1182902.22E-29443511IPR003657WRKY domain
PROSITE profilePS5081138.503446511IPR003657WRKY domain
SMARTSM007741.3E-39451510IPR003657WRKY domain
PfamPF031063.9E-26452509IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MEDSQSHSHS HSQSHAQHHS GEDLDALQSS RVIHAADGSS DASDAVFSRS VAGSNCGARY  60
KLMSPAKLPI ARSAGITIPP GLSPTSFLES PVLLSNIKVA ELFCRVVPWG NGRWKKTSLW  120
FPLQREGRVK AKGAEPSPTT GSFSNLHLMQ GSGGSAAFSF PDSRAFSQRK SSNFEFKFPI  180
GSSSTSASTS IEPMTSAGLN QQQSETQRQV QNQFISQSLA TSSVVESSIP TSNELNLSSA  240
VALHTSSVGT DAIESDDLNQ RGKAVNADQS SVTAERSSDD EYNWRKYGQK LVKGSEFPRS  300
YYKCTYPNCE VKKIFERSPD GKITEIVYKG SHDHPKPQPS RRFTPGAMMP IQEDKFEKES  360
FFNGQEDKFN SIAQTGRPEP SGIPILSPQR VGDDIHEGAT LLLQGTNDDT DDDDPFSKRR  420
KMDGCVDITP VVKPIREPRV VVQTVSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA  480
GCPVRKHVER ASHDPKAVIT TYEGKHNHDL PAARTSSHEM ASTAPESGIS RVRPEENDVI  540
SLDLGVGIGY GTENRTNDQL HSLAPETVPT QVLASGGGMM AVQAPAIVRY GIVNGGINRF  600
GSRENHVQAP GFETLPLQSS NQCPQTLGRI LMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38279512878Probable WRKY transcription factor 4
2lex_A6e-38279512878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194097.10.0PREDICTED: probable WRKY transcription factor 20
TrEMBLM1CX700.0M1CX70_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000766700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-147WRKY family protein