PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000350.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 98aa MW: 10698.9 Da PI: 4.0742

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000350.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	87.2	2.1e-27	19	83	2	66
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE-- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvk 66 Fl k+y++++d+ ++e+++wsengnsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+Yg +++ Itr_sc000350.1_g00009.1 19 FLIKTYDMVDDSGTDEIVQWSENGNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGQIMLT 83 9**********************************************************966655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.6E-28	13	78	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.0E-29	15	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.0E-26	15	83	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.2E-17	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.6E-23	19	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.2E-17	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MDGLAPVQAG GGGGGPAPFL IKTYDMVDDS GTDEIVQWSE NGNSFVVWNP PEFARLLLPT 60 YFKHNNFSSF IRQLNTYGQI MLTATAGTRD DQISDINV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	7e-19	12	92	1	82	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	7e-19	12	92	1	82	HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673379.1	3e-39	PREDICTED: heat stress transcription factor A-5
Swissprot	Q7XHZ0	5e-30	HFB4B_ORYSJ; Heat stress transcription factor B-4b
Swissprot	Q94BZ5	6e-30	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A0J8CRZ7	8e-38	A0A0J8CRZ7_BETVU; Uncharacterized protein
STRING	XP_010673379.1	1e-38	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	3e-32	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]