PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000352.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 257aa    MW: 28970.2 Da    PI: 6.1823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000352.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.92.4e-24181239359
                              -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg+ WrKYG+K+v++s++++sYY+C ++  +Cp+kk+v+ s+ d++  +itY+g+Hnh+
  Itr_sc000352.1_g00009.1 181 DGWVWRKYGKKMVNDSPHSKSYYKCNHEgeKCPAKKHVQLSHMDESKYIITYRGNHNHP 239
                              9**************************999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-24174241IPR003657WRKY domain
SuperFamilySSF1182904.32E-22177241IPR003657WRKY domain
SMARTSM007741.5E-24179240IPR003657WRKY domain
PfamPF031067.6E-21181239IPR003657WRKY domain
PROSITE profilePS5081123.697181241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDGENDWDLA AVVRGCSNLN GNSSSQDVHE HFNGDFPSQT YDSIPLLPQQ SRDHGSAFPS  60
IVTERYYFGL EEVIDRFTSR KTREPIVDPQ GTIIPPTSLD KVDGSGSGGI EKDTRVPQSP  120
NPSPTLEPQQ PLPSPQTDSL EKGGGLEDEK LQVNEVEMLV EKVQVVVEKV EVPVEKVDEW  180
DGWVWRKYGK KMVNDSPHSK SYYKCNHEGE KCPAKKHVQL SHMDESKYII TYRGNHNHPP  240
PVQNTTTKHR KRSRARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-121812411674WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195569.12e-76PREDICTED: probable WRKY transcription factor 69
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.13e-17WRKY DNA-binding protein 69